So....a couple things here.
Plugs should be double platinum. There is a scientific reason for it that's buried somewhere here in the forms, but in order to burn all the fuel properly they should be OEM replacement double platinum plugs. Along with that we've always learned that OEM coil packs and plug wires work the best on these cars. If you have ignition problems in the future maybe look toward those first if you didn't replace them with OEM Ford parts.
But...along with that....stop loading up the parts cannon and throwing parts at it. If there were no issues like this prior to the elbow fix then most likely something got bumped or not plugged back in correctly. Slow down, take the time to diagnose and be confident about what's wrong before installing new (used) parts and bringing potential other problems into the equation.
The rough idle could be a vacuum leak. Make sure that all the vacuum hoses are plugged in correctly and there are no breaks in any of them. If the battery was unplugged for a certain amount of time the car may just need to relearn the idle. Disconnect the battery for 10 minutes, then reconnect and start the car. Don't touch the throttle...just let it idle for 10-15 minutes.
You're probably right about the alternator or belt getting soaked in PS fluid and causing the noise and smoke, but if it's still charging and the battery light isn't on I'm not sure I'd replace it yet. The alternators one these cars are in a horrible place where they catch lots of fluids and road debris. They are also in a terrible place to change and you aren't going to have a fun time doing it. I'm not sure I'd go through that much work to put in a $15.00 junkyard alternator knowing I might have to take it back out again. Are you near a car wash? I'd try cleaning things before I did the alternator job. Use some Gunk engine degreaser and rinse it off with water.
I know, it seems like parts are just being thrown at it, but prior to my ownership of the car, there wasn't any regular maintenance done to it whatsoever.
The coil pack and wires are oem, the plugs obviously are not but I will pick up some of the correct ones and replace.
I've had ignition issues before that ended up simply being a spliced wire that was rewired poorly by the previous owner that I miraculously was able to find and repair on my own.
The rough idle I figured was because of the battery being unplugged for a length of time but the strong fuel smell and the soaked plugs were why I was concerned and it wasn't merely a rough idle, it seemed like the car was choking. IACV is fairly new, and I would have allowed more time for the engine to relearn idle had smoke had not started to spew from the engine bay and that's when I discovered the alternator was the cause.
I changed the alternator over the summer actually, so it is a fairly new (remanufactured) one.... I am near a car wash but I'd rather clean it in the garage... Any tips on cleaning it? Just be careful of the electrical connections for the most part? I figure I can jack it up, remove the wheel and splash guards, and get at it good from there. What about the belt?
Thanks in advance!