We pulled the engine out from the top. We took off the main pulley for the accessory belt and picked up the engine at a slight angle and it just pulled up straight out. Bacically hook up a chain to the two main tow hooks and then chain hoist it up with the hook on the far left, not right in the middle of the chain and the engine should pull out, though you may have to jack up the tranny a bit at an angle and remove the passanger side axle.
Yeah, the knuckle on the lower A-arm was a [censored] to take out and we couldn't take it out without ruining the rubber boot. I ordered a new ball joint from BAT and replaced it but it's possible to just take it to a shop that specializes in that to fix it. We finally had to take off the axle from the wheel, you know pull that nut in the hub then pull the wheel out of the axle and that should make it easier to take off the lower ball joint on the control arm but it could still be tough. But like I said, it's possible to do it without taking out any axles or the tranny by pulling the engine from the top.
SCT is supposed to be so good that the when you tell them all you have, the base tune they send you is very safe. It won't give you optimal power but it would be good enough to drive around. Though I wouldn't drive hard till you get it checked out on the dyno with AF ratio check.
For intercooler pipe, I'd use no bigger than 2.5" from the turbo to the throttle body, and for the intake pipe from the MAF to the turbo I'd use no smaller than 3". My MAF is roughly in the same place as stock with an open element filter. My BOV is just that, and I do have an occasional stalling problem comming down from freeway off ramps and sometimes if I rev it hard then shift to neutral. Takes a little more awareness of my shifting and decelerating. But if you want the noise, that's the price you pay, and it's livable. But yes bypassing it back into the intake is best, but blow-off is cooler.
If you're using stock rods I would not move the rev limiter up. First off without tuned cam gears it's not worth it, as the power starts to drop off just after 6000rpms anyway. Second the stress on the rods in the upper rpms is way worse than the stress in the lower rpms. I don't know the exact equations but the stresses at 3000rpms may only be double at 6000rpms, but from 6-7000rpms it's triple. Like I said, I'm not sure the exact math, but the stresses start being multiplied not added if you know what I mean. Though if you have forged internals they you could do 7000rpms easy, I'm sure, maybe slightly higher, again with tune cam gears to make sure you're power curve is still optimal for you're redline. Just make sure you don't lose too much power down low tuning the gears.